rs27088541 SNP Detail

Summary

• ID
  rs27088541
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:99306759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGATTAAA CAAATGGTCC
  AGGCGACCAG AAAAACTTAG TGGAAAGACT TCTTCAGGCC CAGGAAGGTG TAAGGTGATC
  TGGGGTTGCA ATGAAGACCA GCAGAGCCAC AGAGACTTGT AAATTGGATA TTGTTTCAGA
  AATGCTAACA AGACCCAACC TGCATAGAGA ATCCAAGGAA AAGGAAACTG GCCAAAACAG
  R
  TGCTGAATTC ATATAGCGCA CGGAAGCAGT AACTCCTGGC TGGAAACTTC GCATCCCAGA
  GGAGCCCGTG TGAGGCCTTA CATCTCTTCT TCAAGTTCCT GAACCTGGGA TGAGACCACT
  TCGCCATTCA CTATCTCCTG CACGACTGTC TTGATTTTTC GAGTTTTATT TGGGTCTAAA
  GGTAAAAAAC AAACACAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37288167	NES08564045	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27088541					SNP	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37288167	NES08564045	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99306759 () rs orientation: forward

Symbol	Name	Function Class
A830036E02Rik	RIKEN cDNA A830036E02 gene	1310 bp upstream
Cpgi3798	CpG island 3798	1984 bp proximal
Krt12	keratin 12	mRNA-UTR
Tssr104877	transcription start site region 104877	1208 bp upstream
Tssr104878	transcription start site region 104878	1289 bp upstream
Tssr104879	transcription start site region 104879	1342 bp upstream
Tssr110665	transcription start site region 110665	1036 bp downstream