rs27088548 SNP Detail

Summary

• ID
  rs27088548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99306257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTACCATG GGACCCACAT GGTCCAGATG GCTATGACTG
  ACACACAGCC CATAGCATCA GGTCATCATT AAGTGTATGA AATTAAGTGA ATAGGAACCC
  R
  TTGACTGTAT GAAAGAAGGC CCCAGAAAAT GGAACAAGTG TTCTCTCCTA TAATGGAAAA
  TATAAAATTC CATTAACCTC CGAGAGGATG AACCCTTAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37288174	NES08564037	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	G	A	G	G	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27088548					SNP	G	A	A	A	G	G	A	G	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37288174	NES08564037	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99306257 () rs orientation: forward

Symbol	Name	Function Class
A830036E02Rik	RIKEN cDNA A830036E02 gene	1812 bp upstream
Krt12	keratin 12	235 bp downstream
Rr456499	regulatory region 456499	1888 bp distal
Rr456500	regulatory region 456500	1986 bp distal
Tssr104877	transcription start site region 104877	1710 bp upstream
Tssr104878	transcription start site region 104878	1791 bp upstream
Tssr104879	transcription start site region 104879	1844 bp upstream
Tssr110665	transcription start site region 110665	1538 bp downstream