rs27088549 SNP Detail

Summary

• ID
  rs27088549
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99306208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGG CTATGACTGA CACACAGCCC
  M
  TAGCATCAGG TCATCATTAA GTGTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37288175	NES08564036	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	C	C	C	C	C	A	C	A	A
ss132709336	ENSMUSSNP3236942	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27088549					SNP	C	C	A	A	A	C	C	C	C	C	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37288175	NES08564036	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99306208 () rs orientation: forward

Symbol	Name	Function Class
A830036E02Rik	RIKEN cDNA A830036E02 gene	1861 bp upstream
Krt12	keratin 12	284 bp downstream
Rr456499	regulatory region 456499	1839 bp distal
Rr456500	regulatory region 456500	1937 bp distal
Tssr104877	transcription start site region 104877	1759 bp upstream
Tssr104878	transcription start site region 104878	1840 bp upstream
Tssr104879	transcription start site region 104879	1893 bp upstream
Tssr110665	transcription start site region 110665	1587 bp downstream