rs27088550 SNP Detail

Summary

• ID
  rs27088550
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99306149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTAG ATTTGGCTGC TATTGTTGAT
  K
  ACAGGCTTGC TACCATGGGA CCCAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37288176	NES08564035	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	T	T	G	T	T	T	G	T	G	G	G
ss132709332	ENSMUSSNP6639183	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27088550					SNP	T	T	G	G	G	T	T	G	T	T	T	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37288176	NES08564035	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99306149 () rs orientation: forward

Symbol	Name	Function Class
A830036E02Rik	RIKEN cDNA A830036E02 gene	1920 bp upstream
Krt12	keratin 12	343 bp downstream
Rr456499	regulatory region 456499	1780 bp distal
Rr456500	regulatory region 456500	1878 bp distal
Tssr104877	transcription start site region 104877	1818 bp upstream
Tssr104878	transcription start site region 104878	1899 bp upstream
Tssr104879	transcription start site region 104879	1952 bp upstream
Tssr110665	transcription start site region 110665	1646 bp downstream