rs27088552 SNP Detail

Summary

• ID
  rs27088552
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99306039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTTACGT GTATACGCTT
  TAATCTTTCT CTCTCCACAC CTGTTCAATT TCTGAACGGT ACAGTTGCCC TCCAATAACT
  TGATCCCTTC TTCCTCCATT CTTCTTCAAA ACTTCTGTGA ACCCCCTGTC AAGGTGTCAC
  CATGCCTGGC AGATGTCTAC CTCGACCCCT CAAGACAAGG ACCAAGTCTT ATTCACCATC
  M
  AATCTCCTAG CTTCCATTCT ATGCCATTAG GTCATCATTA AGAGAGAAAT CAGCTTTCTT
  AACCTACAAC TTAGGGTTCT TCCCTCTAGA TTTGGCTGCT ATTGTTGATG ACAGGCTTGC
  TACCATGGGA CCCACATGGT CCAGATGGCT ATGACTGACA CACAGCCCAT AGCATCAGGT
  CATCATTAAG TGTATGAAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37288178	NES08564033	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27088552					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37288178	NES08564033	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99306039 () rs orientation: forward

Symbol	Name	Function Class
Krt12	keratin 12	453 bp downstream
Rr456499	regulatory region 456499	1670 bp distal
Rr456500	regulatory region 456500	1768 bp distal
Tssr104877	transcription start site region 104877	1928 bp upstream
Tssr110665	transcription start site region 110665	1756 bp downstream