rs27088885 SNP Detail

Summary

• ID
  rs27088885
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99512208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGGGCCC ACATATCCCT
  TCCCTCTTGC GGCTGAAGTT TTAGGGTTTA CTGCGGTCAC ACAGCAAGGG TGCAGTGTGA
  GATCTGAGTT CTGAGTCCCC TTACTTATCA GTAAATTGTA TCTGCCCTAA GGTCTATGCT
  TAGCGCTCTG TAAACCATCA TTTTATCGAA GTGAGTAGGA AGTTTCCTTT TATGTTCATG
  Y
  AGGGTTGCTA ACTGATGCCA TCAGTGGAGT GGGGAAACGT TTGACCACAG AAACAGGTAA
  CTCCTGGCTG AGGACCAAGC CCAGAAGGTT CTCTTCAAAG GTCATCAAAG GACAACATGT
  GTTGGTATCA GGCTGGCTCC CTGATGGTAA ACTCACACCT CCCCACACAC ACATACACAA
  ACACACGATA CATGTTAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37287217	NES08563128	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27088885					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37287217	NES08563128	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99512208 () rs orientation: forward

Symbol	Name	Function Class
Gm32730	predicted gene, 32730	within coordinates
Krtap2-20	keratin associated protein 2-20	978 bp upstream
Tssr104883	transcription start site region 104883	406 bp downstream
Tssr110694	transcription start site region 110694	946 bp upstream
Tssr110695	transcription start site region 110695	460 bp upstream