rs27088886 SNP Detail

Summary

• ID
  rs27088886
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99512156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCT AAGGTCTATG CTTAGCGCTC
  K
  GTAAACCATC ATTTTATCGA AGTGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37287218	NES08563127	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	G	G	G	T	G	G	G		T	G	T	T		G
ss132712451	ENSMUSSNP2566410	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						G
ss323829008	CHEV_11_99482644	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27088886					SNP	G	T	G	G	G	G	T	G	G	G	G	T	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37287218	NES08563127	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99512156 () rs orientation: forward

Symbol	Name	Function Class
Gm32730	predicted gene, 32730	within coordinates
Krtap2-20	keratin associated protein 2-20	926 bp upstream
Tssr104883	transcription start site region 104883	354 bp downstream
Tssr110694	transcription start site region 110694	894 bp upstream
Tssr110695	transcription start site region 110695	408 bp upstream