rs27088889 SNP Detail

Summary

• ID
  rs27088889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99511631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTCTTT TGTGGTTTAT
  TCTTACTGAC TCTAAACACG GGATTGAATT ACGATGAGTT TGGAATATTT CTAAGTCATC
  AAAGAGGAAA AGAATTTGTT TTCCAAACCA GATAAGATCT AACCACTCTC TCCTTGTCTC
  TGACGTCATC ATTTTGTCTT CAAAGCCTCC CCAGGTTGCC ACCCAAGCAG TGACTTACCT
  Y
  GTTAGTACAC ATGGACATGA CAGCAGTAGA TTAATACCAC CACTATAAGC CTGACCATCC
  GCATCTGCTT CCCAGAGAAC TCCCAGGATG CATTTCTGGC AGGTTTGTGG TTTCACATCT
  GATGAAGGAC CACACGGGCA TTTATAGCCT GTCACACTGG CTTGATCACT CTCTCTGGCT
  GAGGATCAGG GCTTTCCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37287221	NES08563124	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27088889					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37287221	NES08563124	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99511631 () rs orientation: forward

Symbol	Name	Function Class
Gm32730	predicted gene, 32730	within coordinates
Krtap2-20	keratin associated protein 2-20	401 bp upstream
Tssr104883	transcription start site region 104883	167 bp upstream
Tssr110694	transcription start site region 110694	369 bp upstream
Tssr110695	transcription start site region 110695	112 bp downstream