rs27088891 SNP Detail

Summary

• ID
  rs27088891
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99511338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGCAGCA GCCTCCTCCA
  CAGCTCTGGG AGGAGAAGGA TCCACAGCAG GAGCCTGTCA TGGTGGTGTC TGGGCTGGAG
  TGGGGCTGAG AAGTGAGGAG AGGTTGGGAG TTCTCAGGTG TGATGTCTCC TCTGGATTGG
  GTCCCTTTAT ATACCTGGAC AGTGCTGATG ACCCCCAGGC ACATGATCAC TCTTGTAAAT
  S
  CTCTGGCTAA TTAAGAGAAG AGTTAGCATT GACTAATGGT ATTTTTGTCC CCACTCCCTA
  CATATCATGC ATACACATCA CAAATATCCC TTTATTTTCT TTTGTGGTTT ATTCTTACTG
  ACTCTAAACA CGGGATTGAA TTACGATGAG TTTGGAATAT TTCTAAGTCA TCAAAGAGGA
  AAAGAATTTG TTTTCCAAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37287223	NES08563122	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27088891					SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37287223	NES08563122	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99511338 () rs orientation: forward

Symbol	Name	Function Class
Gm32730	predicted gene, 32730	within coordinates
Krtap2-20	keratin associated protein 2-20	108 bp upstream
Tssr104883	transcription start site region 104883	460 bp upstream
Tssr110694	transcription start site region 110694	76 bp upstream
Tssr110695	transcription start site region 110695	405 bp downstream