rs27088901 SNP Detail

Summary

• ID
  rs27088901
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99510195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGTTTTT ATTCTTGTAA
  AGGCAGTTCC TTTGCAGCTT AGTTTAACAA AGGGGAGGCA AACACTGGCC TTTTGCTAAG
  CACCGAGCTA CCTCTGTACA GACAAAGCCG ATAAATCACA GTCTCTTCCA CAGATGCAGA
  GAAATACGTA ATCTTAGTAT AGGGCTTTAT CAGGCAGTGG GATAGCTCAG GATGCCACCA
  K
  AGTACACCAG GGCACATGAT ATAGCCCGAC TTCACGAAAG TAGATGTGCA CATGCGCATA
  TGTGGTTTGA GATCTAGGAC ATGTCTTCTG GAGAGACGGA AATGACTCTT AGAAATGAAT
  CAGAGCTAAG TAGATGAAAG GATATTTGAG ACAAATGAAC TCAGTTTCCT TGGGCAGAGT
  CTAGACTCCT GCTCATCAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	NZW/LacJ	PWD/PhJ
ss37287233	NES08563112	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	NZW/LacJ	PWD/PhJ
rs27088901					SNP	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37287233	NES08563112	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99510195 () rs orientation: forward

Symbol	Name	Function Class
Gm32730	predicted gene, 32730	within coordinates
Krtap2-20	keratin associated protein 2-20	229 bp downstream
Tssr104883	transcription start site region 104883	1603 bp upstream
Tssr110694	transcription start site region 110694	1063 bp downstream
Tssr110695	transcription start site region 110695	1548 bp downstream