rs27093258 SNP Detail

Summary

• ID
  rs27093258
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:6261846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCAGGAAGG GAGTTCTTTC GGAGGAGGGT TCTAGAAGAT
  GAGGAAGCTT CTAGATTTTC TCACAATGAG TAATGTGCAG GGGGACTTAA CAGGAAACAC
  S
  GTCCCATTCT GGAACAGAGA ACATTCAGGG TCCGGAAACC TTGTATTGCC TGTCTTCAGC
  TCCCTGACTC CCACCCTATC CTACCTCTCC TCTGCTCCC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37319081	NES08824366	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C	G		C	G	C	C		C	C	C		G
ss45238938	mCV25284809	ABI	CRAMUS_MOUSE	f	SNP		G						C		G
ss146277220	ENSMUSSNP2585731	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								G
ss320210436	CHEV_2_6178081	CHEVERUD	SCREENING_POP	f	SNP													C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27093258					SNP	G	G	C	C	C	C	G	C	C	G	C	C	C	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37319081	NES08824366	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6261846 () rs orientation: forward

Symbol	Name	Function Class
A230108P19Rik	RIKEN cDNA A230108P19 gene	within coordinates
Gm13383	predicted gene 13383	within coordinates
Gm46730	predicted gene, 46730	within coordinates
Rr551353	regulatory region 551353	713 bp distal
Rr551354	regulatory region 551354	within coordinates
Tssr22443	transcription start site region 22443	747 bp upstream