rs27093259 SNP Detail

Summary

• ID
  rs27093259
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:6261806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCGTTCT CTTGTAGACA
  GAGATGACCA AGTGTTTGAC ATCACGATGA AGCAGGCCTG TGATTGCAAT GGTAGATTCT
  TTTCTTGTTC CACGCATGCT GTAGATCGAG GCAAGGCGAG CTCTTTTCCT ACCCCTGTGC
  AGCAGGAAGG GAGTTCTTTC GGAGGAGGGT TCTAGAAGAT GAGGAAGCTT CTAGATTTTC
  Y
  CACAATGAGT AATGTGCAGG GGGACTTAAC AGGAAACACC GTCCCATTCT GGAACAGAGA
  ACATTCAGGG TCCGGAAACC TTGTATTGCC TGTCTTCAGC TCCCTGACTC CCACCCTATC
  CTACCTCTCC TCTGCTCCCA ACCCCTCCCC ACCCTCCCCC CACCCCACCC TATGCCATTT
  CAGGCACTGT TTCCCTACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37319082	NES08824365	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		T	T	T		C
ss320210435	CHEV_2_6178041	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27093259					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37319082	NES08824365	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6261806 () rs orientation: forward

Symbol	Name	Function Class
A230108P19Rik	RIKEN cDNA A230108P19 gene	within coordinates
Gm13383	predicted gene 13383	within coordinates
Gm46730	predicted gene, 46730	within coordinates
Rr551353	regulatory region 551353	673 bp distal
Rr551354	regulatory region 551354	within coordinates
Tssr22443	transcription start site region 22443	707 bp upstream