rs27093263 SNP Detail

Summary

• ID
  rs27093263
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:6260598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGTGACC AGAAACTCAG
  AGTTACCATG TTGTCTCCTG GACTGTATTG TTTTCTTTAT TTTTTAAAAA GATATTGGAA
  GTCCTTTAAT GAGTTGTTTA TATTTCATGC CAAATGAGCA CTCATTATTA TCTTCAGCTA
  CAAAAGCATT TGGTGTTTTC TGTGCTTAAG CTGCTAGTTT CAGAATCCAG TTATAGCCTG
  W
  TCTACGCCAG ACAAGAGCCG AAAACGTTGT ATGTAAATCA GGTTTTTGAC AACTTAGTCC
  TATTTCAAAA TCACTGGAGG AGAAACCAAA CGGAAAGAAA CTTTTGATGA ATTTTTTTTT
  CTTTTTCCTT CTTTCTTTCT TTCTTTTTTT TTTTTTATGT GAAATGAAAC CATTCATGTA
  TTACAATGGG TAGAACTGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37319086	NES08824361	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27093263					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37319086	NES08824361	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6260598 () rs orientation: forward

Symbol	Name	Function Class
A230108P19Rik	RIKEN cDNA A230108P19 gene	within coordinates
Gm13383	predicted gene 13383	within coordinates
Gm46730	predicted gene, 46730	1051 bp upstream
Rr551353	regulatory region 551353	514 bp proximal
Rr551354	regulatory region 551354	561 bp proximal
Tssr22443	transcription start site region 22443	497 bp downstream