rs27094214 SNP Detail

Summary

• ID
  rs27094214
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:13212686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGCATTG CTCAAGAGAT
  GCTCTGGAGA GAGATGCCAT ATAACTACAA AATATATGTA TTCAGGTGAT GAGAACTGTA
  TTTACAGACA TGCCCGTGGA ATAACAAAAA TTAAATCTTG GAGCTTGGTT ACTGCCGGCA
  TTTCTCTCAG GGCAAGAACA CATTTAGTGT CCCATTAAAT CAAAGGATGC CCACTGCAAA
  Y
  AGTGGCATGC TTTGCCAGCT GGTGCTAACA CAGATTGATG CACGTGTTCA ATCACCCTGA
  ACCTGATGTG CCTCCGGAAA TTTACACTGC ACAACGAAAA GGTTTGATAT GACACAGCTT
  CCCACCCCCT TTACGACAGT AACTCATCAG GTAGAAATGC GGCTCACTTA GCAAGTTTAA
  AAATCCATGC TTAAAGCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37331843	NES08803491	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27094214					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37331843	NES08803491	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:13212686 () rs orientation: forward

Symbol	Name	Function Class
Rr551952	regulatory region 551952	1093 bp distal
Rr551953	regulatory region 551953	848 bp distal
Rsu1	Ras suppressor protein 1	Intron