rs27094222 SNP Detail

Summary

• ID
  rs27094222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:13212267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTCATTTA CTATTGTTCT
  CCAAACCAGC AGACATAAGA ACACATCCCC CAGAGAAACT AGTATAAAAA AGAAAACTGA
  ATATGGCCAT CCAATGGGGT GGTAACTGAG GCCTAGTATA AGCTCAGACT AGCTTCTTAG
  CATTGAAGTC CAGGGCCTTC AAACTGACTT AAGTTCACAT GGCATATTTA GATGCTCTGA
  Y
  CGCAGACTAG TCATTGCAGG AAACTAGAAC ACATGAACAG TTCCAGAACG GCCTAAAGGA
  ACATAGTCTT GAAACTTGAT CTGTAACGAC TTATGAAAAA GTGTAGTTGC AGCTTTGTCA
  CTAGATCCCT GGGGTAAGCA ATATAAAGGA AACCCATCCC CGGTCTACTC CAAAGTGTTC
  ACACTCACAT TTGTAATATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37331851	NES08803477	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27094222					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37331851	NES08803477	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:13212267 () rs orientation: forward

Symbol	Name	Function Class
Rr551952	regulatory region 551952	674 bp distal
Rr551953	regulatory region 551953	429 bp distal
Rsu1	Ras suppressor protein 1	Intron