rs27094226 SNP Detail

Summary

• ID
  rs27094226
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:13211799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGGTCCA GGGGAGTTTG
  AGATTTTACA TTTGTTTCAG ATTTTGGAAT ATTTGCATTT GCATAATGAG ATATCATAGG
  GATGGGCCCA AATCTAAATT ATCAATTTGT TTATATCTGT AGCCACAGCA GACAAAGCCT
  GAATCCCGTA GCCACTGCAG ACAAAGTCGG AAGCCAATTC TATACAGTAG TGTTATGGTA
  Y
  CTGTATTTGG ACTTCAACCT GCCACAAGAG GTCAGAAGAG GAATTTTCCA AGGAGGGAGT
  TCTACTGGCT TCTAGTGAGT GTCAGATTTC AGACTTTTAG ATTCAGGAAG CCAGGTAAGA
  CATAAAGGTA AACCAGACAG GTGGGTAACA GGGAGCCTAT GGTTATGCAA AAAGAGACAT
  TACTAGCCAT TTCTATTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37331855	NES08803472	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27094226					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37331855	NES08803472	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:13211799 () rs orientation: forward

Symbol	Name	Function Class
Rr551952	regulatory region 551952	206 bp distal
Rr551953	regulatory region 551953	18 bp proximal
Rsu1	Ras suppressor protein 1	Intron