rs27094232 SNP Detail

Summary

• ID
  rs27094232
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:13211272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAAGAGC AGAGATGCAA
  ATCCCAACTA TACCAAGCCA ACACAGACAG CATTGATTTA AAAGGTGCAC ATCAGCATAA
  GAGGTGCACA TAAGGTTTCT GAGACACCCA ATTTACCATC AGACAGTAGG AGAAATAGAG
  AAATAGAGAG TCTTCAGAGA ACCGGAGAGT AAAACTGTAA ACACACGGGC CACACAGCAC
  K
  GCTACAGAAG CAGAGAAGCC ATGCCCGCAC AGAGAGAGAC TTCGCAGACT CCTCCCACCC
  TTCAGCTGGC TCTCACAGCA CGGGGTGTGG CCATGCAGGC TGGTGGAGAA GACGCTTTCT
  CCAGGTAAGA GCTGTTCATT GGTGCAAGGC AAGAGTACCT GCACACCCCT TCCCAGCATG
  CACCCAGAGA TTCTAGTTAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37331861	NES08803466	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27094232					SNP	T	T	T	T	T	T	G	T	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37331861	NES08803466	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:13211272 () rs orientation: forward

Symbol	Name	Function Class
Rr551952	regulatory region 551952	within coordinates
Rr551953	regulatory region 551953	545 bp proximal
Rsu1	Ras suppressor protein 1	Intron