rs27095339 SNP Detail

Summary

• ID
  rs27095339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:3624539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGAAGCCT TGAGGCTGTG
  GTTCTCAACC TTCCTAATGC GGTGGCCCTT TAATACAGTT CCTCATGTTG TGACCCACAG
  GTTGGGAACC ACTTCCCTAA GATGCCCACT GAACACAGTT TTTAGTGACC ACCGCTCTTA
  AGGAAATTGC TTAAAGCAAG ATTGCCAAAC AAACCCTTAC TTGGGTTCAA GTTCTTTCTG
  R
  TCACGCCAAT AAAAATAACT TCAAGGTATG CGAGCATGCA CACACACACA TACACACACA
  CACACACACA CACACACACA CACACACACA CACACACCCC TCAGCATCTC TGACAGTTTT
  GCACCCTAAG CCTTTTTCAG CAATGTTGCG ACCAGTTAGG TAACTCATTA AACCTTAGAT
  CCTGTGCCAA TGATCTTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37328064	NES08847204	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27095339					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37328064	NES08847204	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3624539 () rs orientation: forward

Symbol	Name	Function Class
Gm50615	predicted gene, 50615	Intron
Rr550923	regulatory region 550923	40 bp proximal