rs27095345 SNP Detail

Summary

• ID
  rs27095345
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:3624183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTCCATA CTATAAAGCA
  AACACACTTA TAGAGAAAGC TTGCAGACTT CTGTGGAATC CCTGGGCCAT GGACAGAAGC
  ATTGTGCAGA CATTTGATGC ATGTTGTCAG TTGCAGAGAA GGGTAACACA ATAATCCATT
  ATCTTCCATT ACCCTAATGT GGTTTGCTTA ACCCAATTAG CCAGGTGAGA ACATGGATTG
  K
  AATGAAACCC TAAACCTGTA CACTGAGGCA AATCATAGCA GGGGATTGGT GTTGGGGAGA
  TGACATGGAG AAACAAGACC ACCCTGAAAC TCCATTTCCT AGGACTGGGC TGTAGCAGAA
  ATCCAGAAGA CAGGAAAGAA AGTGCAGGAA AAAGATAGGA AGCCTTGAGG CTGTGGTTCT
  CAACCTTCCT AATGCGGTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37328070	NES08847271	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T	T	G	T	T	T	T	T	T	G	T
ss146262540	ENSMUSSNP332251	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27095345					SNP	G	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37328070	NES08847271	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3624183 () rs orientation: forward

Symbol	Name	Function Class
Gm50615	predicted gene, 50615	Intron
Rr550923	regulatory region 550923	396 bp proximal