rs27095354 SNP Detail

Summary

• ID
  rs27095354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:3623796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAACAGGCT GACCTTGAAC
  TTACAGAGAT CTACTTGCCT CAGATTCTTG GTCCTGGGAT GTGCTCCTTC CTTCCTTCCT
  TCCTTCCTTC CTTCCTCCCT CCCTCTCCCT CTCCTCCTTT CTTCCTTCCT TTCTTCTTCT
  TCTTCTTCTT TTTTTTTTTT AACTTTTAAC ATGTTGTGTT TCCAAAGAGT TGATATGGAA
  Y
  AGGGAAAACC AGCATGAAGC CTGACTTTCC CTGTACCCCA CTTTCTCATT GTAGAAACAG
  CAAGGGATCA GCATGAGCCC TGCCCTCTGT ATTTCAGTGG GCACCCTCAA CCCTCACCTT
  GGAGCCAGAA TGGCGCATGA TTACAGTAAC CTTTTTGTGT GAGGAATCAC CTGCTTTCTG
  TGTTACACTG TCCATACTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37328079	NES08847254	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27095354					SNP	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37328079	NES08847254	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3623796 () rs orientation: forward

Symbol	Name	Function Class
Gm50615	predicted gene, 50615	Intron
Gm75735	predicted gene, 75735	1961 bp upstream
Rr550923	regulatory region 550923	783 bp proximal