rs27097258 SNP Detail

Summary

• ID
  rs27097258
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:7095980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTAAAACC ACAGAAAATT
  GTAGAAGAGA CAAACTAGAG GCATGGTAAT TTCTGACTCT GCTTTCAAGT AAAAACAATT
  ACAAAGGACC CTCTTAAATA AAAAGCAATG GGTAAAAACA GTAAGAAGGA GAGACTCATT
  TTTTTTTAAG GGTGAGACCC TGGTAGGTCA GTCACTCTTC AAGGTAGGGA CCAAACCCAG
  S
  AATGTTTGGA CAGTGAAAAT TAGACCTGAT GGGTTGAGAA GGGAGAAGGG ACAGGTCAGA
  AGGTGGCTGG GCAAGTAGGG TAAATATGGG CCAGCTGGGG ATGTGTGAAT GCAAATGGGG
  TGTGAATGAG ATCAAATACA TTGTATGAAA TTCACAAAGC ATTAACGAGA ATATCATTTT
  TAGAAAAAAA GAAAATCTTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37316229	NES08826044	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27097258					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37316229	NES08826044	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:7095980 () rs orientation: forward

Symbol	Name	Function Class
Celf2	CUGBP, Elav-like family member 2	Intron
Rr551491	regulatory region 551491	1207 bp distal
Rr551492	regulatory region 551492	1523 bp proximal