rs27097261 SNP Detail

Summary

• ID
  rs27097261
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:7095633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGTTTGC TATTCGAGCA
  AAGGAAGCTG GGTTTGGTCA TCTGCTCCCT GACAAGAACA TGACACTACC TCCTGCTCTG
  AGCCACAGCA CCAGAGCAAT ACAGTGGTCA GCTGCCCACA ATAATATTGT GGCTGAACTG
  CAGATGTCCC ACATTGGCTC TTGTTGTTTT TGCATACTTG GTCTCTGACT GGTAGTGTTG
  W
  TTGGGAAGGT TCTAGAACTG TTAGGAGTTG GAGTCTTGCT GGAGGAAGTA CATTCCATAG
  GGGCAAGCTT TGTATGTACA AAACCTGACC TGAGTTCATA TTGAAAGCAG AATTAGTTAG
  CACACAATGT GAACAGTTAA CTACAGAAGT AAAACCACAG AAAATTGTAG AAGAGACAAA
  CTAGAGGCAT GGTAATTTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37316232	NES08826041	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27097261					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37316232	NES08826041	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:7095633 () rs orientation: forward

Symbol	Name	Function Class
Celf2	CUGBP, Elav-like family member 2	Intron
Rr551491	regulatory region 551491	860 bp distal
Rr551492	regulatory region 551492	1870 bp proximal