rs27097859 SNP Detail

Summary

• ID
  rs27097859
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:10675205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTGCGTT AGCATCTTCT
  GGTTTACACT TTGGAACTCA GTTCCCAGTG TCTGCCTGGT GGGTTGATGT GGATATTGAC
  AGTAGTCCCA CCATCTCAGA TCCTAACCCT TGGCCTCAAC CCAAGTTGGT TGCACTGACT
  TGGGGAACTG TATTTTAGTT CCACTATCAG CTGTGGAAGA GTTAGCGTGC CCTTAATTAA
  Y
  GGTAGGAGAA GATTCCAGGA AAGAACTTGA GAGTCACAGG GAGGCATGCC ATCCTTTGTC
  CTCTCAATTC CTTCCTGCCT CAAAATGTTT TTATGTGGCT TAAATGGGCT GATTAAGGGC
  AGAGGTGGAA AATGAGCCCA GGTTTCACCA AGTAATTACT TTCACCCCTA TGAACTTAAC
  TCATAAAATA GAGGTCAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37339185	NES08819572	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27097859					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37339185	NES08819572	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:10675205 () rs orientation: forward

Symbol	Name	Function Class
Rr551699	regulatory region 551699	within coordinates
Rr551700	regulatory region 551700	717 bp proximal