rs27097860 SNP Detail

Summary

• ID
  rs27097860
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:10675189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGACTGA TCTTAGAAGT
  TGCGTTAGCA TCTTCTGGTT TACACTTTGG AACTCAGTTC CCAGTGTCTG CCTGGTGGGT
  TGATGTGGAT ATTGACAGTA GTCCCACCAT CTCAGATCCT AACCCTTGGC CTCAACCCAA
  GTTGGTTGCA CTGACTTGGG GAACTGTATT TTAGTTCCAC TATCAGCTGT GGAAGAGTTA
  K
  CGTGCCCTTA ATTAACGGTA GGAGAAGATT CCAGGAAAGA ACTTGAGAGT CACAGGGAGG
  CATGCCATCC TTTGTCCTCT CAATTCCTTC CTGCCTCAAA ATGTTTTTAT GTGGCTTAAA
  TGGGCTGATT AAGGGCAGAG GTGGAAAATG AGCCCAGGTT TCACCAAGTA ATTACTTTCA
  CCCCTATGAA CTTAACTCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37339186	NES08819571	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27097860					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37339186	NES08819571	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:10675189 () rs orientation: forward

Symbol	Name	Function Class
Rr551699	regulatory region 551699	within coordinates
Rr551700	regulatory region 551700	733 bp proximal