rs27098839 SNP Detail

Summary

• ID
  rs27098839
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:6483896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCGATTAT TATTTTGTTT
  CAAAGGCTGC TGGGCTGAGC TGTCCAAATA TGGCAGCAGA AGATGGAGCA AGCCCCGTCA
  AACGTTCAGA CTATGAGGCT CCACTCAGAG GTTAGATGTT CTTGGCTTTT TTTGTGGAAA
  GGTTTAACAG CTTCCTTCCT TCCCGTGCTC CCTCCTGGCC CTCCCAGGGG TTCATAACAG
  Y
  TGCCAATGCC TCCGTGCTGC CACAGGGAGG ACATCTGGTA CGGGGCCATC CTGGGGCCTG
  GCTTTTTGCC ATGAACACGT GACAAGAAAG ATGGGGTGCT GGGGGCTGGA GCCTTGGCTC
  GGTTGGAGAA GTCCTAGAGT ATAAGCATGT AAACAAAGCC GGGGGCAGAC TCATGCGCTT
  GTTATCCCAG TACTGGGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37318276	NES08818372	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27098839					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37318276	NES08818372	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6483896 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11178	CpG island 11178	551 bp distal
Gm13391	predicted gene 13391	466 bp downstream
Gm38386	predicted gene, 38386	605 bp upstream
Gm52546	predicted gene, 52546	1011 bp upstream
Rr551409	regulatory region 551409	637 bp distal
Rr551410	regulatory region 551410	136 bp distal