rs27098842 SNP Detail

Summary

• ID
  rs27098842
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:6483393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACATCTAC TTTAAGTCGA
  AGTGTTTACT CATCAAGACG TCTTTGCCGA CACGCACACT TGCCTGAAGA CATCACGCAC
  ACATGCGTAA GCACTCACGT GGACCCGAGG GTTTGCAGCC TCACAGGAAC AGTGCTCGTG
  GAGGAAGTCC TGTGTGACTC ATTCTGTTTG TGTGCTTGGC TGATGTTTCC GGTTTCCATG
  Y
  AATTTGCTCC TTTTGTATCA AGACAGAAGT AACGGTGTTT TGCCTCTTTT ATTACTTATT
  GTAATCACTG TGGTATTCAG GATCATCTGC AAAACACCAT TCAGCAGGAG GGTGGGCACA
  TCGACAGCCT CTTCCCTGTC AGGGTGAAAG CAGAGGGTGT CACCCTTGTC AGATGTCTTG
  ATGAGGCAGA AGGGACAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37318279	NES08818369	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27098842					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37318279	NES08818369	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6483393 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11178	CpG island 11178	48 bp distal
Gm13391	predicted gene 13391	within coordinates
Gm38386	predicted gene, 38386	1108 bp upstream
Gm52546	predicted gene, 52546	508 bp upstream
Rr551409	regulatory region 551409	134 bp distal
Rr551410	regulatory region 551410	within coordinates