rs27099561 SNP Detail

Summary

• ID
  rs27099561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:12165685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCTTGCA CATCTTGGAC
  ACTAGGGGGC AGAGTAGAGA GCATTCTTGA ATGGGCATAA ACAGTTGAAT GCACATACAC
  CTATGTGCAT TCATAAAGCC TGCTACTTAT TCTTTTTGTA AATATGTGTA TGTACCTCTG
  TGTTGTGTGT TGGTGTATAA ATACATCTAG GATCCCGTGA GTTCTATTCA ATCTCCAGTT
  Y
  GGAAAAAGTA GTTTCTGGTT AAAGCTGCCT GCAAAGAACA GCAGCTACTC TGTGTATGTT
  CCTTCTTTCT AGATTCACTG CAGGGAGCAG AGCCAGAATC AAACCCGGAA AGGGTCAAGT
  ATGACGGAGG CATAGAATTG TTTTATAGAA AGTTCAAGGG GCAAGAGAGG TGGAGCTAAA
  GTGTTGCCAT CATCTAAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37335081	NES08805608	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27099561					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37335081	NES08805608	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:12165685 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Itga8	integrin alpha 8			Intron
				Noncoding-Transcript-Variant
Rr372775	regulatory region 372775			1978 bp downstream
Rr551880	regulatory region 551880			84 bp distal
Rr551881	regulatory region 551881			165 bp distal