rs27099563 SNP Detail

Summary

• ID
  rs27099563
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:12165410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAACAAT CTGCGGAGGG
  TGGGACACTC TGTAATATGA AATATTAGGT TAATTACTGA TGAGGGCCCA CTAAGGATGT
  CTGTTGCTAT TAATATATGC AACTGGTTTC ATATATTACA CTGATTTCAA AGGAAGCAAG
  TTGAAGTTAT CTAAAGATAT ATATAACACA TGGTACGACA CTGTCAGTAA GGCTGGGTGA
  R
  ATGATGGAGT GAAGAGTGGA GACGCAGAAG CTCTGCAGTT TTAGTTACTG GTCTATTCTA
  CAGCCACTGT TTTACAGTCT TGCACATCTT GGACACTAGG GGGCAGAGTA GAGAGCATTC
  TTGAATGGGC ATAAACAGTT GAATGCACAT ACACCTATGT GCATTCATAA AGCCTGCTAC
  TTATTCTTTT TGTAAATATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37335083	NES08805606	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27099563					SNP	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37335083	NES08805606	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:12165410 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Itga8	integrin alpha 8			Intron
				Noncoding-Transcript-Variant
Rr372775	regulatory region 372775			1703 bp downstream
Rr551880	regulatory region 551880			9 bp proximal
Rr551881	regulatory region 551881			89 bp proximal