rs27099564 SNP Detail

Summary

• ID
  rs27099564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:12164650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATAATTAT GCTGTCATGT
  TCTTCCTCAT AAATTATTTC TATATTTTGG TACAGTAATA AATAATTCAT TCATAAAGTA
  TTCGAATAGT ACCTTATATA TACTATTTTA GTTTATAAAT ACATAAGTAT CTAAAAATGT
  GAGCCGAAAA GAAAAGAAAT ACAACCAAAG GAGCTAGTTT TTATTTTAAT GTATAGGTTG
  Y
  CCAAATATTA TGTGGAAAAC AGACAAACTA TTTTTAAAAT ATCACTTAAT AAGAGAAGAC
  TGTCACTCTT ACCCCTGAGG ACTGAGTGTC CATGATTATG GTTATAAATA ACCATTGGCA
  GCCATTGAAA AATGGTACCA TAATAGCACA AATTACAAAG GTTGGACCTA AGGTTCTATG
  AATTTCTTAT TAGTAAAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37335084	NES08805635	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27099564					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37335084	NES08805635	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:12164650 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Itga8	integrin alpha 8			Intron
				Noncoding-Transcript-Variant
Rr372775	regulatory region 372775			943 bp downstream
Rr551880	regulatory region 551880			769 bp proximal
Rr551881	regulatory region 551881			849 bp proximal