rs27099863 SNP Detail

Summary

• ID
  rs27099863
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88903780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCATGTG TGTGGACATA
  TGCACTCTGA TGTAGAGGCT AAGGTCAGAG GACAACTTAT GGAAGTCAGT TTTCTCCTTC
  CACTGTGTGG GTCCTGGGGA TAGGACTCAG GTTTGGTGGC AAGCTCCTTT ACCCACAGAG
  CCATCTTGAC AGAGTCATTT CCACTCTTGG GAGTAGGACT CTGTTCTTTG GGGATGCAGG
  Y
  GATGGCCCTG AACGTCACTG TGGCCATCCC AGTGTCCTCG CAGAAGGGCT TCTGAAGCAG
  GTAAGTACTT CTGAACCTCA TGGAAGGTTC TGGAAATGCT TCACATGGAT TGTATGAGTA
  ACTAGACTGC CAAGAGAGGG AGGAAAGGAC CAGGGGGCAA GAATCTGACA TTGACTTAGC
  CTCCACTCCA CACCAGACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37315101	NES08586237	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		T	T	T	T		T
ss323783790	CHEV_11_88874268	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27099863					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37315101	NES08586237	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88903780 () rs orientation: forward

Symbol	Name	Function Class
Rr454280	regulatory region 454280	372 bp distal
Trim25	tripartite motif-containing 25	within coordinates
Tssr104067	transcription start site region 104067	1977 bp downstream