rs27099864 SNP Detail

Summary

• ID
  rs27099864
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88903567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCCTCTCA CCATATGAAA ATCATTAAAC CGTTACAATT
  TTCTACCAGG TTCCCTTAAA ACCTTTAAAG AGAAAACACA TTTATTTATT CAGTATGGAT
  R
  CGTGTATGTA TATGTGCATG TGTGTGGACA TATGCACTCT GATGTAGAGG CTAAGGTCAG
  AGGACAACTT ATGGAAGTCA GTTTTCTCCT TCCACTGTGT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	DBA/2J	PWD/PhJ	WSB/EiJ
ss37315102	NES08586264	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	DBA/2J	PWD/PhJ	WSB/EiJ
rs27099864					SNP	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37315102	NES08586264	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88903567 () rs orientation: forward

Symbol	Name	Function Class
Trim25	tripartite motif-containing 25	within coordinates
Tssr104066	transcription start site region 104066	1832 bp downstream
Tssr104067	transcription start site region 104067	1764 bp downstream