rs27099865 SNP Detail

Summary

• ID
  rs27099865
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88903523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAC AATTTTCTAC CAGGTTCCCT
  Y
  AAAACCTTTA AAGAGAAAAC ACATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37315103	NES08586263	PERLEGEN	MM_PANEL2	f	SNP		C	C		T	T		C
ss132549955	ENSMUSSNP786967	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss323783786	CHEV_11_88874011	CHEVERUD	SCREENING_POP	f	SNP				T			C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs27099865					SNP	C	C	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37315103	NES08586263	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88903523 () rs orientation: forward

Symbol	Name	Function Class
Trim25	tripartite motif-containing 25	within coordinates
Tssr104066	transcription start site region 104066	1788 bp downstream
Tssr104067	transcription start site region 104067	1720 bp downstream