rs27099902 SNP Detail

Summary

• ID
  rs27099902
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88890461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTAGGGTG CGCAGCTGTC
  CCTGCGCGTC ACGTCGGGTG AGCCCACGAG CGCGATGGCG GAGCTGAATC CTCTGGCCGA
  GGAGCTGTCC TGCTCCGTCT GCCTGGAGCT CTTCAAGGAA CCTGTCACCA CTCCGTGCGG
  CCACAATTTC TGCATGTCAT GCCTGGATGA GACGTGGGTC GTCCAGGGCC CGCCGTACCG
  R
  TGCCCGCAAT GTCGCAAAGT GTACCAGGTG CGCCCGCAGC TGCAAAAGAA CACGGTAATG
  TGCGCGGTGG TGGAGCAGTT CCTGCAGGCC GAGCAGGCGC GGACCCCGGT GGACGACTGG
  ACGCCTCCTG CCCGCTTCTC CGCCTCCAGC GCAGCCACCC AGGTGGCCTG CGACCACTGC
  CTGACGGAGA TCGCAGTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37315140	NES08586596	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27099902					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37315140	NES08586596	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88890461 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3524	CpG island 3524	within coordinates
Gm11496	predicted gene 11496	204 bp upstream
Rr386439	regulatory region 386439	1334 bp downstream
Rr402858	regulatory region 402858	70 bp downstream
Rr454275	regulatory region 454275	324 bp distal
Rr454276	regulatory region 454276	249 bp distal
Rr454277	regulatory region 454277	273 bp proximal
Trim25	tripartite motif-containing 25	within coordinates
Tssr104062	transcription start site region 104062	201 bp downstream
Tssr104063	transcription start site region 104063	156 bp downstream