rs27099903 SNP Detail

Summary

• ID
  rs27099903
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88890098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGATGAT TGGTGACACC
  TCGGGGACAC AGATGAATGT TCTCCAAAGC TCTGCTGCAC TGTGCTAGGA CGTAGGCCCC
  GACCAGGAGG GTGGGAATAT TCCAGCCCCT GCGACAATTC ATCTGCAGAG TGCCTCTGAA
  ACTGCACCTG GTAGCCCTTG GGTCGTGCGT CGCTCGGGTC CGCGGGGTGT GGAGAGCATC
  M
  GAGTTCCCCA GGTCCCATAA TCACCTTTGG CTTCCAGCAC CAGGAGGGAA GCCTCCCGCC
  CACTGTCCGG CCCCCAGGGA CCCACGTGAC TTCCTGAAGC CCCAGGGCGC CGCCCCTCCT
  GTTCAGTTTC GATTCCTTCC TCGCTGCTTC TTAAGTACCG CGCGGTAGGG TGCGCAGCTG
  TCCCTGCGCG TCACGTCGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37315141	NES08586595	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27099903					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37315141	NES08586595	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88890098 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3524	CpG island 3524	within coordinates
Gm11496	predicted gene 11496	within coordinates
Rr386439	regulatory region 386439	971 bp downstream
Rr402858	regulatory region 402858	within coordinates
Trim25	tripartite motif-containing 25	104 bp upstream
Tssr104062	transcription start site region 104062	113 bp upstream
Tssr104063	transcription start site region 104063	170 bp upstream