rs27099904 SNP Detail

Summary

• ID
  rs27099904
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88890086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCTGTTC TGGAGGGATG
  ATTGGTGACA CCTCGGGGAC ACAGATGAAT GTTCTCCAAA GCTCTGCTGC ACTGTGCTAG
  GACGTAGGCC CCGACCAGGA GGGTGGGAAT ATTCCAGCCC CTGCGACAAT TCATCTGCAG
  AGTGCCTCTG AAACTGCACC TGGTAGCCCT TGGGTCGTGC GTCGCTCGGG TCCGCGGGGT
  R
  TGGAGAGCAT CAGAGTTCCC CAGGTCCCAT AATCACCTTT GGCTTCCAGC ACCAGGAGGG
  AAGCCTCCCG CCCACTGTCC GGCCCCCAGG GACCCACGTG ACTTCCTGAA GCCCCAGGGC
  GCCGCCCCTC CTGTTCAGTT TCGATTCCTT CCTCGCTGCT TCTTAAGTAC CGCGCGGTAG
  GGTGCGCAGC TGTCCCTGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37315142	NES08586594	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27099904					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37315142	NES08586594	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88890086 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3524	CpG island 3524	within coordinates
Gm11496	predicted gene 11496	within coordinates
Rr386439	regulatory region 386439	959 bp downstream
Rr402858	regulatory region 402858	5 bp upstream
Rr454274	regulatory region 454274	1758 bp distal
Rr454275	regulatory region 454275	within coordinates
Rr454276	regulatory region 454276	52 bp proximal
Rr454277	regulatory region 454277	648 bp proximal
Trim25	tripartite motif-containing 25	116 bp upstream
Tssr104062	transcription start site region 104062	125 bp upstream
Tssr104063	transcription start site region 104063	182 bp upstream