rs27099906 SNP Detail

Summary

• ID
  rs27099906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88890020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACGAGCCA CCAAGCTCTG
  GGTCAACAGT ATTTTGTTCT GTTTGGCTTT GAGTTTTAAT AAGACCGGTC CTGTTCTGGA
  GGGATGATTG GTGACACCTC GGGGACACAG ATGAATGTTC TCCAAAGCTC TGCTGCACTG
  TGCTAGGACG TAGGCCCCGA CCAGGAGGGT GGGAATATTC CAGCCCCTGC GACAATTCAT
  Y
  TGCAGAGTGC CTCTGAAACT GCACCTGGTA GCCCTTGGGT CGTGCGTCGC TCGGGTCCGC
  GGGGTGTGGA GAGCATCAGA GTTCCCCAGG TCCCATAATC ACCTTTGGCT TCCAGCACCA
  GGAGGGAAGC CTCCCGCCCA CTGTCCGGCC CCCAGGGACC CACGTGACTT CCTGAAGCCC
  CAGGGCGCCG CCCCTCCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss37315144	NES08586592	PERLEGEN	MM_PANEL2	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs27099906					SNP	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37315144	NES08586592	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88890020 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3524	CpG island 3524	within coordinates
Gm11496	predicted gene 11496	within coordinates
Rr386439	regulatory region 386439	893 bp downstream
Rr402858	regulatory region 402858	71 bp upstream
Rr454274	regulatory region 454274	1692 bp distal
Rr454275	regulatory region 454275	within coordinates
Rr454276	regulatory region 454276	118 bp proximal
Rr454277	regulatory region 454277	714 bp proximal
Trim25	tripartite motif-containing 25	182 bp upstream
Tssr104062	transcription start site region 104062	191 bp upstream
Tssr104063	transcription start site region 104063	248 bp upstream