rs27099908 SNP Detail

Summary

• ID
  rs27099908
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88889099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGTGTCT CAATCTGTTA
  CATTATTGAA ACAGTGAACC CCAGAGAAAT GGGAGTTTCC TTGGAATCTC ATGCTGGGAG
  AGACCAGAGG GAGAATTTGT CTCCTGGGAA AAGATTTCAC AGTTAGTACA GCTTGTGGGA
  CAGAACAGCT TACCAAATGA GATTGAATCC CAGACAATGA TGGGCCACTG GTAGGCTGGA
  Y
  CAGGTCTGGA CTGGCACTTA GATACAAATA TTTTTGCCTT CTGTTTTAAC TCTGTTCTCA
  CTTCAGAACG GGGAAGGTGG ACTTGAGGGG TTTGCTGGGT CTCTTTTTTC TGTTTTCCTC
  TTTTAAGTAG GCTCATTTAA TTGGCTTAAG GACCGGTGGC TGGAGCTGAC TTGGGGCAAA
  AGTTGTGACA CCCAACTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37315146	NES08586630	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27099908					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37315146	NES08586630	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88889099 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3524	CpG island 3524	824 bp proximal
Gm11496	predicted gene 11496	within coordinates
Rr386439	regulatory region 386439	within coordinates
Rr402858	regulatory region 402858	992 bp upstream
Rr454272	regulatory region 454272	1690 bp distal
Rr454273	regulatory region 454273	1347 bp distal
Rr454274	regulatory region 454274	771 bp distal
Rr454275	regulatory region 454275	267 bp proximal
Rr454276	regulatory region 454276	1039 bp proximal
Rr454277	regulatory region 454277	1635 bp proximal
Trim25	tripartite motif-containing 25	1103 bp upstream
Tssr104062	transcription start site region 104062	1112 bp upstream
Tssr104063	transcription start site region 104063	1169 bp upstream
Tssr110061	transcription start site region 110061	1740 bp upstream