rs27099909 SNP Detail

Summary

• ID
  rs27099909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88888691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTAATGGG ATATAATACC
  CCTCTTATGG TTTGTCTGAA GACAGCTACA ATGTACATAA TATAAATAAA TCTTTTTTTA
  AAAAATACTG TATGTGCACA TATAAGAGAG AAAACATTTG TTAAATTTGG GAGTCCCCAA
  ATCCCAAGTG AGTAAAAATT TCTCTTTTTT TTTTTTTCAG TATTGAAAAT TGCTAGGCAA
  R
  GGACTTTACC ACCAAGCTAT ATTCCCAGAC CCTTATTACT TAAGTGAGGG TAGGGTGGGT
  TCTATGTAGC CCAGGCTGGC CTTGAATTTG AGTTCCTCCT GCTTCAGTCT CCCCAGAGAG
  AGTTCTGGGA TAATAGGTGT GTCCCACCTC ACCCAATTTA AAAGTATTAT AACCAATCTG
  GCTTAGATGA AGAAATTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37315147	NES08586642	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		G	A	A	G		A
ss323783674	CHEV_11_88859179	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27099909					SNP	A	A	A	A	A	A	A	A	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37315147	NES08586642	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88888691 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3524	CpG island 3524	1232 bp proximal
Gm11496	predicted gene 11496	within coordinates
Rr386439	regulatory region 386439	within coordinates
Rr402858	regulatory region 402858	1400 bp upstream
Rr454272	regulatory region 454272	1282 bp distal
Rr454273	regulatory region 454273	939 bp distal
Rr454274	regulatory region 454274	363 bp distal
Rr454275	regulatory region 454275	675 bp proximal
Rr454276	regulatory region 454276	1447 bp proximal
Trim25	tripartite motif-containing 25	1511 bp upstream
Tssr104062	transcription start site region 104062	1520 bp upstream
Tssr104063	transcription start site region 104063	1577 bp upstream
Tssr110061	transcription start site region 110061	1332 bp upstream