rs27099910 SNP Detail

Summary

• ID
  rs27099910
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88888111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGCACAC AGTAGGTGCC
  TCATAAACAA TGGCTATTAG ATACTATGAG ATATTTACCT TGTCCTTTTG GCTGCTTAAC
  ATTGTCATCC AAGGTAAACT CCCATAATCC CTCAAGGAGC TTCTTTCCCA CAGTGGAATT
  TCCCATCAGA CACTCGGATT CTCCTGTCCA CCCTTCTGTT CTGCACTCAG CCCAGATTGC
  R
  GGACTGCCTT ACAGAACTAA AAACAATGTA AGCCTAAATG AATGATTTTG AAAAAAAAAA
  ATTGAAGCTT CAATATTGTG TGTGAAGGGG GCTGTCGAGA TGGCTCAGTG GTTAATAGCG
  CCAACTGCTC TTCTGAAGGT CCCAAGTTCA AATCCCAGCA ACCACATGGT GGCTCACAAC
  TATCCGTAAT GAGATCTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37315148	NES08586663	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		G	A	A	G		A
ss323783667	CHEV_11_88858599	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27099910					SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37315148	NES08586663	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88888111 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3524	CpG island 3524	1812 bp proximal
Gm11496	predicted gene 11496	within coordinates
Rr386439	regulatory region 386439	within coordinates
Rr402858	regulatory region 402858	1980 bp upstream
Rr454272	regulatory region 454272	702 bp distal
Rr454273	regulatory region 454273	359 bp distal
Rr454274	regulatory region 454274	196 bp proximal
Rr454275	regulatory region 454275	1255 bp proximal
Tssr110060	transcription start site region 110060	1525 bp upstream
Tssr110061	transcription start site region 110061	752 bp upstream