rs27099911 SNP Detail

Summary

• ID
  rs27099911
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88888058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTC CCACAGTGGA ATTTCCCATC
  R
  GACACTCGGA TTCTCCTGTC CACCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss37315149	NES08586662	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		A	G	G	G		G	G	G
ss38805590	mCV24310799	ABI	CRAMUS_MOUSE	f	SNP		G	G					A		G
ss132549591	ENSMUSSNP3716262	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							G
ss323783666	CHEV_11_88858546	CHEVERUD	SCREENING_POP	f	SNP													G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs27099911					SNP	G	G	G	G	G	G	G	A	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37315149	NES08586662	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88888058 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3524	CpG island 3524	1865 bp proximal
Gm11496	predicted gene 11496	within coordinates
Rr386439	regulatory region 386439	within coordinates
Rr454272	regulatory region 454272	649 bp distal
Rr454273	regulatory region 454273	306 bp distal
Rr454274	regulatory region 454274	249 bp proximal
Rr454275	regulatory region 454275	1308 bp proximal
Tssr110060	transcription start site region 110060	1472 bp upstream
Tssr110061	transcription start site region 110061	699 bp upstream