rs27099938 SNP Detail

Summary

• ID
  rs27099938
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88863974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCTAGTTG AAAATAAATA AATAAATTGG CTGTCTTTTA
  AAATAAATAT TAAATAACCC TAAAAGCACA AATACTGCTC TCGCGTCATA CTGTATTCTA
  Y
  CTCTCGACTG GAGGTGGCCA GCAGCCAGCA GCCAGCAGCA GCCATCCCTG AGGAGAAAGG
  AACAAAGCTA GAACAGGGCG TCCGTAGGGG ATGATTCCCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37315176	NES08587248	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27099938					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37315176	NES08587248	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88863974 () rs orientation: forward

Symbol	Name	Function Class
2210409E12Rik	RIKEN cDNA 2210409E12 gene	146 bp downstream
Coil	coilin	787 bp upstream
Cpgi3523	CpG island 3523	598 bp proximal
Gm10367	predicted gene 10367	within coordinates
Rr237596	regulatory region 237596	1574 bp distal
Rr247482	regulatory region 247482	226 bp proximal
Tssr104059	transcription start site region 104059	771 bp upstream
Tssr104060	transcription start site region 104060	780 bp upstream