rs27099971 SNP Detail

Summary

• ID
  rs27099971
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88815357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGA CACAGAAGGC CACAGTCTTT
  Y
  GGTACGGGAG AGAGCAGGTG CTCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37315213	NES08588094	PERLEGEN	MM_PANEL2	f	SNP		T	T	T		T	T		C	C		T
ss38691826	mCV23475648	ABI	CRAMUS_MOUSE	f	SNP	T	T			C	T
ss323782835	CHEV_11_88785845	CHEVERUD	SCREENING_POP	f	SNP								T			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs27099971					SNP	T	T	T	T	C	T	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37315213	NES08588094	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88815357 () rs orientation: forward

Symbol	Name	Function Class
Scpep1	serine carboxypeptidase 1	within coordinates
Scpep1os	serine carboxypeptidase 1, opposite strand	within coordinates
Tssr110047	transcription start site region 110047	255 bp upstream
Tssr110048	transcription start site region 110048	238 bp upstream
Tssr110049	transcription start site region 110049	183 bp upstream
Tssr110050	transcription start site region 110050	8 bp downstream
Tssr110051	transcription start site region 110051	49 bp downstream
Tssr110052	transcription start site region 110052	73 bp downstream
Tssr110053	transcription start site region 110053	101 bp downstream
Tssr110054	transcription start site region 110054	168 bp downstream