rs27099972 SNP Detail

Summary

• ID
  rs27099972
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88814399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCATAGGATA GGCCCTTGGG GAAAGAATAA GACACAGCAA
  AGGCCTAACT AAGTGTGGGA TTCTCAGGAG CTGCCTCTTT CCTTAACAAC AAATGCATCG
  S
  AAACATAGCA CAGGCTTCTA ATGAACAAAG GGGCACAAGA GACAGAAGAG TGACCCCAGG
  GGAGATGAGT CTTATCCAGT GAGCTTAGAT AATGCTGCTG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37315214	NES08588112	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27099972					SNP	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37315214	NES08588112	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88814399 () rs orientation: forward

Symbol	Name	Function Class
Scpep1	serine carboxypeptidase 1	447 bp downstream
Scpep1os	serine carboxypeptidase 1, opposite strand	within coordinates
Tssr110047	transcription start site region 110047	695 bp downstream
Tssr110048	transcription start site region 110048	710 bp downstream
Tssr110049	transcription start site region 110049	764 bp downstream
Tssr110050	transcription start site region 110050	966 bp downstream
Tssr110051	transcription start site region 110051	1007 bp downstream
Tssr110052	transcription start site region 110052	1031 bp downstream
Tssr110053	transcription start site region 110053	1059 bp downstream
Tssr110054	transcription start site region 110054	1126 bp downstream