rs27100710 SNP Detail

Summary

• ID
  rs27100710
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:10445628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTTCCT TTCTCCTTCC
  TTTGTGTCAG TTCATCTATA CCCACTGTCT ACCCACATTC ATCTCGTTCC CCACACTCCC
  ACGTAACACT TATTCACTTA ACACCCTCCC ACTTTTACAC GCAGACACTT GCTCTCTATC
  CATCTATATC CATTCACTTG CCCAGGTTCA TCCTTAATAC TGTGCATCCG CTGCAGCCTT
  S
  TCATCTACTT ACTCACACAA CTATGTACCA CCCATTCACA TGTATGTTAT ATGTATGACC
  TATGTATCTA TGTGTCTGTC TGTCTGTCTA TCATCTGTTT TACATCCATC CATCGATCAA
  AATTTCATAT CACTTGCTCA TCATTATATA GTAAAGGAAA CAGAAATAAA AGAGTTAATC
  TGTTCTTTTC CTCTGCCAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37339737	NES08825309	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27100710					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37339737	NES08825309	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:10445628 () rs orientation: forward

Symbol	Name	Function Class
Sfmbt2	Scm-like with four mbt domains 2	within coordinates
Tssr16091	transcription start site region 16091	938 bp downstream