rs27100713 SNP Detail

Summary

• ID
  rs27100713
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:10444461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTATAAAT TTACAGCCCT
  ATATTAGATA CATCTGTCAA TTTGAAGAGA AAAGTAGACA TTTTGTTATC AGTTGTTCTT
  GCTCTGGTGC ATCTGAGAAT AATTTTGCTA AAAACATGTG CTAATTTCTA ATAAATGCAA
  TTTTATTTGG GAAGGTTAAT TTGTTTGATT AAAACAATGG CATAAACTGT TGCTTTCCAT
  Y
  CACTTGTGAT TTTTGCTGTT GGAAATGGTG TTGGTTTATG GATGTGTAGA GGAGGAAGGG
  GGTTGGGGGT GGCGGCTGTG CAGGGGATAT CAGGATGTTT GGGAACCGCT TGGATGATGG
  CGTGGGAAAA AATGATTATC TTCTGCTGTC ATCTGTTTCC ATGGGAACCT TAAAAAATCA
  AGTTTAAAAT ACGGAGTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37339740	NES08825306	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27100713					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37339740	NES08825306	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:10444461 () rs orientation: forward

Symbol	Name	Function Class
Sfmbt2	Scm-like with four mbt domains 2	Intron
Tssr16091	transcription start site region 16091	225 bp upstream