rs27100714 SNP Detail

Summary

• ID
  rs27100714
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:10444307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAGCAGC ACTTAAGATT
  GCCCTCCGGC CTCCACACTT GCACAAATGT GTCTCAGATG TGTCACCTGC ACATACATCT
  GCATGCATTC AGTTAATCTG TATATGACAG GGTTCTGGCT GCTGTTAGAT GTACGGTGAC
  CTCTTAAGAA GTCGTGGTAT AAATTTACAG CCCTATATTA GATACATCTG TCAATTTGAA
  R
  AGAAAAGTAG ACATTTTGTT ATCAGTTGTT CTTGCTCTGG TGCATCTGAG AATAATTTTG
  CTAAAAACAT GTGCTAATTT CTAATAAATG CAATTTTATT TGGGAAGGTT AATTTGTTTG
  ATTAAAACAA TGGCATAAAC TGTTGCTTTC CATCCACTTG TGATTTTTGC TGTTGGAAAT
  GGTGTTGGTT TATGGATGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37339741	NES08825305	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27100714					SNP	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37339741	NES08825305	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:10444307 () rs orientation: forward

Symbol	Name	Function Class
Sfmbt2	Scm-like with four mbt domains 2	within coordinates
Tssr16091	transcription start site region 16091	379 bp upstream