rs27100717 SNP Detail

Summary

• ID
  rs27100717
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:10443313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCCTCAA GCCTCAGCTT
  GCAGGATAAC TTGGGTGGCA GGAGAGGAGT AAGCATAGTC CTGTGCTTAC CGTAGTCTCC
  GGGAGCCCAC TAATAAGTAG CGCCATTCAT TGCTCATCTC GAGTGCGTAA TAACTCCATG
  CTCTCTCACA TATGTGCTAC CCAAGACTAT TGATTAGCAA TCTCCATAAA ACAAGAGGAG
  K
  TACCACTGAC TGTATTAAAG TGTGGCTCAG GCAGATTTTA GGCATAGGAG CAGAAGAGTT
  TAACATCAAG TCTTGATGGT TTGTCTGAAA ATGTGATAAT GAAACATTAA TAATTCTAAT
  ATGTACTTGA ACAGGAAGAC AAAGGCAATA TGTCGTATGT AATTATTAAA TTACCAACTC
  TGTCCTAAGG GTACACTGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37339744	NES08825380	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T		T	T	G		T	T	G	T
ss146291735	ENSMUSSNP2451683	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27100717					SNP	T	T	T	T	T	T	T	T	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37339744	NES08825380	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:10443313 () rs orientation: forward

Symbol	Name	Function Class
Sfmbt2	Scm-like with four mbt domains 2	within coordinates
Tssr16091	transcription start site region 16091	1373 bp upstream