rs27106718 SNP Detail

Summary

• ID
  rs27106718
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94072911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCCCCAC CCCTTGTGGC
  ACCTGTCTTC AGTGGTTCAG CAGCCTATTG TCATTACCAG CCATGATTCA AGTTCCTCGG
  GTTCAGAAAG CAAGCCATAG CCAGGCAACC TCCGCCCCCC CCAGCCTCCT CCTGGCCACC
  CCTGCCTTTT GGTGGGGCCA ATTCAAAAGA ATTGCCCCAA ACAGAGCTGC TAGAATCCAG
  Y
  CACCAGGAGC AGGACCTCCC TTCCACACAC CTTCCCAAAT TCTCCTATGA GCCATTCCCT
  TACTGCTTGG GGTCTCTCTT CTCCTGTGAT CTTCTCCCCA CCCCCTCGCC CTTTGACTGT
  CCTTGTACGT ATGATGCAAA TACTCTGGAA AGGGCTCTGC TGGGCACTTG GACACTGGGA
  TGAGACGCTC ATCATGATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37300350	NES08571821	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	T	T		C	C	T	C
ss323812253	CHEV_11_94043399	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27106718					SNP	C	C	C	C	C	C	T	T	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37300350	NES08571821	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94072911 () rs orientation: forward

Symbol	Name	Function Class
Tssr110134	transcription start site region 110134	1743 bp upstream