rs27109091 SNP Detail

Summary

• ID
  rs27109091
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:5859602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTGACT TTGAAAGTGA
  GTAGATGTTA CTGGGACTGG ACCCTGGTTA ATGCAGACTG AATGTAAGCA GAATGGTGCC
  TCTGAGAGCC TCTGCATGCC TTCTGAGGCC GTTCTCCCAG AGAGGCCCGT GACGATTTGT
  TAGTAGATAA TCTTTTTTAA CTAGTAAGTC CTTTGACTAC CCACGGTTGG GAAAGCCTCA
  R
  CAAACCTCAC TCACTTCCTT ACAGCTTGAA CTTTCCACCT GAGGACTGTG GAGGCCGACA
  AGTCGAAATG GAGACCCGAG AATCCACAGA GTCTTCTCCA GGCAAGCACC TTGTTACCTC
  AGAGGAGGTG AGTGGAGCTT GTTTTCCTGC CCTTTCCCTT CACCACACAA TAGCCAGGTT
  AGAAAGACGA TGCGGGCGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37320320	NES08844962	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27109091					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37320320	NES08844962	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:5859602 () rs orientation: forward

Symbol	Name	Function Class
Nudt5	nudix hydrolase 5	within coordinates
Rr43848	regulatory region 43848	1799 bp proximal
Rr49685	regulatory region 49685	1802 bp distal
Tssr16009	transcription start site region 16009	1934 bp downstream