rs27109094 SNP Detail

Summary

• ID
  rs27109094
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:5857595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCCCCAG GTTCTACCAA
  TTTTTAAAAA AGAAAGAAAA GAAAGCTAGA GCATTTTTAG GGGCTAGGCA CTTACTGCAA
  GCATTTCAGG CCATTGTAGG CAGTTGAATG AGTGTGTTCA GTAGTGCTCC ACGGTTGCCT
  AAAAGTTATT TTTCTTTAGA ATTAGAATTC AAAATTCCCT TGCATCAGCA AATTTCCTTC
  W
  GCTATGTGAT TAGTCAGAAG GAACAGTTCT CTAGGCGATA AAAGGCTCTC TAGCCAGACA
  TAGTGGCACA GGCCTCTCTA ATCTCAGCCC TTGAAAAGTG GAAGCCCAAA GATCTCACCT
  GAACTCCACG AGGTCTTGTC TCAAGAAACA AAGAACAACT CTACTCTCTT TTATGTGAGT
  ATAGAGTGTG CAGGGTGGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37320323	NES08845012	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27109094					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37320323	NES08845012	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:5857595 () rs orientation: forward

Symbol	Name	Function Class
Nudt5	nudix hydrolase 5	within coordinates
Rr49685	regulatory region 49685	6 bp proximal
Tssr16009	transcription start site region 16009	61 bp upstream